HL_9FBV_096

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9FBV|1|a|G|2751, 9FBV|1|a|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FBV_096 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0577

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

9FBV|1|a|C|2745
9FBV|1|a|U|2746
9FBV|1|a|G|2747
9FBV|1|a|A|2748
9FBV|1|a|A|2749
9FBV|1|a|A|2750
9FBV|1|a|G|2751
9FBV|1|a|C|2752
9FBV|1|a|A|2753
9FBV|1|a|U|2754
9FBV|1|a|C|2755
9FBV|1|a|U|2756
9FBV|1|a|A|2757
9FBV|1|a|A|2758
9FBV|1|a|G|2759

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13