HL_9FCO_008

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FCO_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0611

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9FCO|1|B|A|320
9FCO|1|B|A|321
9FCO|1|B|C|322
9FCO|1|B|U|323
9FCO|1|B|G|324
9FCO|1|B|A|325
9FCO|1|B|G|326
9FCO|1|B|A|327
9FCO|1|B|C|328
9FCO|1|B|A|329
9FCO|1|B|C|330
9FCO|1|B|G|331
9FCO|1|B|G|332
9FCO|1|B|U|333

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20