HL_9FDA_006

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FDA_006 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0713

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9FDA|1|B|A|320
9FDA|1|B|A|321
9FDA|1|B|C|322
9FDA|1|B|U|323
9FDA|1|B|G|324
9FDA|1|B|A|325
9FDA|1|B|G|326
9FDA|1|B|A|327
9FDA|1|B|C|328
9FDA|1|B|A|329
9FDA|1|B|C|330
9FDA|1|B|G|331
9FDA|1|B|G|332
9FDA|1|B|U|333

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20