3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
CGAAGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9FDA_014 not in the Motif Atlas
Homologous match to HL_5J7L_016
Geometric discrepancy: 0.0594
The information below is about HL_5J7L_016
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

9FDA|1|B|C|726
9FDA|1|B|G|727
9FDA|1|B|A|728
9FDA|1|B|A|729
9FDA|1|B|G|730
9FDA|1|B|G|731

Current chains

Chain B
16S rRNA

Nearby chains

Chain O
Small ribosomal subunit protein uS15
Chain U
Small ribosomal subunit protein bS21

Coloring options:


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