HL_9FDA_016

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FDA_016 not in the Motif Atlas

Homologous match to HL_5J7L_019

Geometric discrepancy: 0.0552

The information below is about HL_5J7L_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9FDA|1|B|C|862
9FDA|1|B|U|863
9FDA|1|B|A|864
9FDA|1|B|A|865
9FDA|1|B|C|866
9FDA|1|B|G|867

Current chains

Chain B

16S rRNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5