HL_9FIB_009

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CCUUCGG

Length

7 nucleotides

Bulged bases

9FIB|1|B|U|420, 9FIB|1|B|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FIB_009 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.1229

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9FIB|1|B|C|418
9FIB|1|B|C|419
9FIB|1|B|U|420
9FIB|1|B|U|421
9FIB|1|B|C|422
9FIB|1|B|G|423
9FIB|1|B|G|424

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4