9FIB Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9FIB_001 | 1/B/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_9FIB_002 | 1/B/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_9FIB_003 | 1/B/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_9FIB_004 | 1/B/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_9FIB_005 | 1/B/296:301 | GNRA | homologous HL_5J7L_007 HL_37824.7 | |
| HL_9FIB_006 | 1/B/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_9FIB_007 | 1/B/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_9FIB_008 | 1/B/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_9FIB_009 | 1/B/418:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_9FIB_010 | 1/B/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_9FIB_011 | 1/B/522:527 | GNRA variation | homologous HL_5J7L_205 HL_37824.7 | |
| HL_9FIB_012 | 1/B/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_9FIB_013 | 1/B/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_9FIB_014 | 1/B/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_9FIB_015 | 1/B/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_9FIB_016 | 1/B/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_9FIB_017 | 1/B/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_9FIB_018 | 1/B/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_9FIB_019 | 1/B/1515:1520 | GNRA | homologous HL_5J7L_031 HL_37824.7 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9FIB_001 | 1/B/30:32, 1/B/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_9FIB_002 | 1/B/44:45, 1/B/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.6 | |
| IL_9FIB_003 | 1/B/47:52, 1/B/359:361 | No text annotation | geometric IL_5J7L_003 IL_14177.2 | |
| IL_9FIB_004 | 1/B/54:56, 1/B/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.3 | |
| IL_9FIB_005 | 1/B/63:66, 1/B/103:104 | Multiple bulged bases | homologous IL_5J7L_005 IL_82107.4 | |
| IL_9FIB_006 | 1/B/67:69, 1/B/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_9FIB_007 | 1/B/70:73, 1/B/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_9FIB_008 | 1/B/128:131, 1/B/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_9FIB_009 | 1/B/132:136, 1/B/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_9FIB_010 | 1/B/144:146, 1/B/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.6 | |
| IL_9FIB_011 | 1/B/147:153, 1/B/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_9FIB_012 | 1/B/242:247, 1/B/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.3 | |
| IL_9FIB_013 | 1/B/249:252, 1/B/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_9FIB_014 | 1/B/292:293, 1/B/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_9FIB_015 | 1/B/367:369, 1/B/392:393 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_9FIB_016 | 1/B/371:375, 1/B/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_9FIB_017 | 1/B/375:376, 1/B/387:389 | Single bulged G | homologous IL_5J7L_019 IL_00225.13 | |
| IL_9FIB_018 | 1/B/409:415, 1/B/427:433 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_9FIB_019 | 1/B/440:442, 1/B/492:497 | No text annotation | geometric IL_5J7L_021 IL_33323.1 | |
| IL_9FIB_020 | 1/B/446:450, 1/B/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 IL_88269.4 | |
| IL_9FIB_021 | 1/B/450:455, 1/B/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_9FIB_022 | 1/B/504:511, 1/B/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_9FIB_023 | 1/B/515:521, 1/B/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_54177.4 | |
| IL_9FIB_024 | 1/B/580:584, 1/B/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_9FIB_025 | 1/B/594:596, 1/B/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_9FIB_026 | 1/B/597:598, 1/B/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_68140.4 | |
| IL_9FIB_027 | 1/B/605:612, 1/B/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_9FIB_028 | 1/B/654:655, 1/B/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 IL_50694.7 | |
| IL_9FIB_029 | 1/B/659:660, 1/B/745:747 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_9FIB_030 | 1/B/662:666, 1/B/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_9FIB_031 | 1/B/673:677, 1/B/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 IL_49751.4 | |
| IL_9FIB_032 | 1/B/684:688, 1/B/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_9FIB_033 | 1/B/774:778, 1/B/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_9FIB_034 | 1/B/779:783, 1/B/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_17136.7 | |
| IL_9FIB_035 | 1/B/887:894, 1/B/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_9FIB_036 | 1/B/922:923, 1/B/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_31462.6 | |
| IL_9FIB_037 | 1/B/925:927, 1/B/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_9FIB_038 | 1/B/1399:1401, 1/B/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_9FIB_039 | 1/B/1401:1404, 1/B/1497:1501 | No text annotation | geometric IL_8CRE_467 IL_65718.4 | |
| IL_9FIB_040 | 1/B/1405:1407, 1/B/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 IL_87907.2 | |
| IL_9FIB_041 | 1/B/1407:1409, 1/B/1491:1494 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_9FIB_042 | 1/B/1412:1415, 1/B/1485:1488 | No text annotation | ||
| IL_9FIB_043 | 1/B/1416:1419, 1/B/1481:1484 | Double sheared | homologous IL_4LFB_060 IL_09705.15 | |
| IL_9FIB_044 | 1/B/1430:1435, 1/B/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_9FIB_045 | 1/B/1440:1442, 1/B/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.6 | |
| IL_9FIB_046 | 1/B/1445:1448, 1/B/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9FIB_001 | 1/B/46:47, 1/B/361:367, 1/B/393:395 | No text annotation | geometric J3_5J7L_001 J3_67856.4 | |
| J3_9FIB_002 | 1/B/46:52, 1/B/359:367, 1/B/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_9FIB_003 | 1/B/586:588, 1/B/651:654, 1/B/754:755 | No text annotation | geometric J3_5J7L_002 J3_56052.5 | |
| J3_9FIB_004 | 1/B/586:588, 1/B/651:655, 1/B/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_9FIB_005 | 1/B/672:673, 1/B/717:725, 1/B/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_9FIB_006 | 1/B/826:829, 1/B/857:861, 1/B/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J4_9FIB_001 | 1/B/115:122, 1/B/239:240, 1/B/286:289, 1/B/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_9FIB_002 | 1/B/142:144, 1/B/178:184, 1/B/193:198, 1/B/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J5_9FIB_001 | 1/B/36:39, 1/B/403:406, 1/B/436:440, 1/B/497:500, 1/B/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_9FIB_002 | 1/B/36:39, 1/B/403:406, 1/B/436:442, 1/B/492:500, 1/B/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_9FIB_003 | 1/B/58:61, 1/B/106:113, 1/B/314:316, 1/B/337:339, 1/B/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J6_9FIB_001 | 1/B/817:821, 1/B/879:885, 1/B/912:921, 1/B/1396:1399, 1/B/1504:1507, 1/B/1528:1529 | No text annotation |
Problematic loops
No problematic loops
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