HL_9FMD_001

3D structure

PDB id

9FMD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Integrative model of the human post-catalytic spliceosome (P-complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

9FMD|1|2|C|164, 9FMD|1|2|U|167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FMD|1|2|G|158
9FMD|1|2|U|159
9FMD|1|2|A|160
9FMD|1|2|U|161
9FMD|1|2|U|162
9FMD|1|2|G|163
9FMD|1|2|C|164
9FMD|1|2|A|165
9FMD|1|2|G|166
9FMD|1|2|U|167
9FMD|1|2|A|168
9FMD|1|2|C|169
9FMD|1|2|C|170
9FMD|1|2|U|171
9FMD|1|2|C|172

Current chains

Chain 2

U2 snRNA

Nearby chains

Chain 1

PRKR-interacting protein 1

Chain h

Small nuclear ribonucleoprotein Sm D3

Chain o

U2 small nuclear ribonucleoprotein A'

Chain p

U2 small nuclear ribonucleoprotein B''