9FMD Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9FMD_001 | 1/2/158:172 | No text annotation | ||
| HL_9FMD_002 | 1/5/37:45 | No text annotation | ||
| HL_9FMD_005 | 1/6/64:70 | GNRA | geometric HL_2XLK_001 HL_34789.4 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9FMD_003 | No text annotation | ||
| HL_9FMD_004 | Externally structured |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9FMD_011 | 1/2/1:3, 1/6/95:97 | No text annotation | ||
| IL_9FMD_012 | 1/2/8:10, 1/6/88:90 | No text annotation | ||
| IL_9FMD_013 | 1/2/22:25, 1/6/52:53 | No text annotation | ||
| IL_9FMD_001 | 1/2/31:35, 1/IN/142:147 | No text annotation | ||
| IL_9FMD_003 | 1/5/19:23, 1/5/57:58 | No text annotation | ||
| IL_9FMD_004 | 1/5/24:28, 1/5/54:56 | No text annotation | ||
| IL_9FMD_005 | 1/5/35:37, 1/5/45:47 | No text annotation | ||
| IL_9FMD_014 | 1/6/38:40, 1/IN/7:9 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.3 | |
| IL_9FMD_015 | 1/6/40:42, 1/IN/5:7 | Isolated non-canonical cWW pair | geometric IL_3CUL_008 IL_01003.4 | |
| IL_9FMD_009 | 1/6/58:61, 1/6/75:77 | Isolated non-canonical cWW pair | geometric IL_3TD0_002 NA | |
| IL_9FMD_010 | 1/6/61:62, 1/6/72:75 | Multiple bulged bases | geometric IL_7RQB_098 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9FMD_002 | No text annotation | ||
| IL_9FMD_006 | Single bulged C | ||
| IL_9FMD_007 | No text annotation | ||
| IL_9FMD_008 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9FMD_001 | 1/2/11:20, 1/6/55:57, 1/6/78:87 | No text annotation |
Problematic loops
No problematic loops
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