HL_9FMD_005
3D structure
- PDB id
- 9FMD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Integrative model of the human post-catalytic spliceosome (P-complex)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UGCGCAA
- Length
- 7 nucleotides
- Bulged bases
- 9FMD|1|6|C|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9FMD_005 not in the Motif Atlas
- Geometric match to HL_2XLK_001
- Geometric discrepancy: 0.1182
- The information below is about HL_2XLK_001
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_34789.4
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 399
Unit IDs
9FMD|1|6|U|64
9FMD|1|6|G|65
9FMD|1|6|C|66
9FMD|1|6|G|67
9FMD|1|6|C|68
9FMD|1|6|A|69
9FMD|1|6|A|70
Current chains
- Chain 6
- U6 snRNA
Nearby chains
- Chain 32
- Protein FAM32A
- Chain 5
- U5 spliceosomal RNA; U5 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain EX
- Exon
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- SNW domain-containing protein 1
- Chain T
- Pleiotropic regulator 1
Coloring options: