HL_9FQZ_021

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

9FQZ|1|L5|G|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_021 not in the Motif Atlas

Homologous match to HL_9PN5_023

Geometric discrepancy: 0.4322

The information below is about HL_9PN5_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_63894.5

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

25

Unit IDs

9FQZ|1|L5|C|1816
9FQZ|1|L5|U|1817
9FQZ|1|L5|G|1818
9FQZ|1|L5|G|1819
9FQZ|1|L5|C|1820
9FQZ|1|L5|G|1821
9FQZ|1|L5|U|1822
9FQZ|1|L5|G|1823

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29