HL_9FQZ_033

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUUCGCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9FQZ_033 not in the Motif Atlas

Homologous match to HL_8GLP_042

Geometric discrepancy: 0.0595

The information below is about HL_8GLP_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52776.1

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

3

Unit IDs

9FQZ|1|L5|G|2664
9FQZ|1|L5|U|2665
9FQZ|1|L5|U|2666
9FQZ|1|L5|C|2667
9FQZ|1|L5|G|2668
9FQZ|1|L5|C|2669
9FQZ|1|L5|C|2670

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain Lp

60S ribosomal protein L37a