HL_9FRL_032
3D structure
- PDB id
- 9FRL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.97 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9FRL_032 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.0931
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9FRL|1|4|G|31
9FRL|1|4|OMC|32
9FRL|1|4|U|33
9FRL|1|4|C|34
9FRL|1|4|A|35
9FRL|1|4|U|36
9FRL|1|4|A|37
9FRL|1|4|A|38
9FRL|1|4|C|39
Current chains
- Chain 4
- tRNA Met initiator
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 5
- mRNA
- Chain K
- Small ribosomal subunit protein uS9
- Chain T
- Small ribosomal subunit protein uS19
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