HL_9G06_010

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9G06|1|B|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_010 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.3015

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9G06|1|B|G|462
9G06|1|B|U|463
9G06|1|B|U|464
9G06|1|B|A|465
9G06|1|B|A|466
9G06|1|B|U|467
9G06|1|B|A|468
9G06|1|B|C|469
9G06|1|B|C|470

Current chains

Chain B

16S ribosomal RNA

Nearby chains