9G06 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9G06_001 | 1/B/12:22 | No text annotation | homologous HL_5J7L_001 NA | |
| HL_9G06_002 | 1/B/158:163 | GNRA | homologous HL_5J7L_003 NA | |
| HL_9G06_003 | 1/B/186:191 | GNRA | homologous HL_5J7L_004 NA | |
| HL_9G06_004 | 1/B/259:267 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_9G06_005 | 1/B/296:301 | GNRA | homologous HL_5J7L_007 NA | |
| HL_9G06_006 | 1/B/320:333 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_9G06_007 | 1/B/342:347 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_9G06_008 | 1/B/379:384 | GNRA | homologous HL_5J7L_010 NA | |
| HL_9G06_009 | 1/B/418:424 | UNCG | homologous HL_5J7L_011 NA | |
| HL_9G06_010 | 1/B/462:470 | GNRA wlth extra near cWW | homologous HL_5J7L_012 NA | |
| HL_9G06_011 | 1/B/522:527 | GNRA variation | homologous HL_5J7L_205 NA | |
| HL_9G06_012 | 1/B/617:623 | GNRA-like with tWH | homologous HL_5J7L_014 NA | |
| HL_9G06_013 | 1/B/689:698 | No text annotation | homologous HL_5J7L_015 NA | |
| HL_9G06_014 | 1/B/726:731 | GNRA | homologous HL_5J7L_016 NA | |
| HL_9G06_015 | 1/B/786:796 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_9G06_016 | 1/B/862:867 | GNRA | homologous HL_5J7L_019 NA | |
| HL_9G06_017 | 1/B/897:902 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_9G06_018 | 1/B/963:972 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_9G06_019 | 1/B/1012:1017 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_9G06_021 | 1/B/1076:1081 | GNRA | homologous HL_4LFB_024 HL_34789.1 | |
| HL_9G06_022 | 1/B/1089:1096 | T-loop related | homologous HL_5J7L_024 NA | |
| HL_9G06_023 | 1/B/1134:1140 | No text annotation | homologous HL_4LFB_026 HL_92935.1 | |
| HL_9G06_024 | 1/B/1265:1270 | GNRA | homologous HL_4LFB_028 HL_34789.1 | |
| HL_9G06_025 | 1/B/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_9G06_026 | 1/B/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_9G06_027 | 1/B/1449:1454 | UNCG | homologous HL_5J7L_030 NA | |
| HL_9G06_028 | 1/B/1515:1520 | GNRA | homologous HL_5J7L_031 NA | |
| HL_9G06_030 | 1/a/31:39 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_81376.1 | |
| HL_9G06_031 | 1/a/53:61 | T-loop with 2 stacked bulged bases | homologous HL_8WND_005 HL_33597.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9G06_020 | No text annotation | ||
| HL_9G06_029 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_9G06_001 | 1/B/30:32, 1/B/552:553 | Single bulged G | homologous IL_4LFB_001 IL_28408.1 | |
| IL_9G06_002 | 1/B/44:45, 1/B/396:398 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_9G06_003 | 1/B/47:52, 1/B/359:361 | No text annotation | geometric IL_5J7L_003 NA | |
| IL_9G06_004 | 1/B/54:56, 1/B/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_9G06_005 | 1/B/63:66, 1/B/103:104 | Multiple bulged bases | homologous IL_5J7L_005 NA | |
| IL_9G06_006 | 1/B/67:69, 1/B/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 NA | |
| IL_9G06_007 | 1/B/70:73, 1/B/97:98 | Minor groove platform | homologous IL_5J7L_007 NA | |
| IL_9G06_008 | 1/B/128:131, 1/B/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 NA | |
| IL_9G06_009 | 1/B/132:136, 1/B/227:230 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_9G06_010 | 1/B/144:146, 1/B/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 NA | |
| IL_9G06_011 | 1/B/147:153, 1/B/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_9G06_012 | 1/B/242:247, 1/B/277:284 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_9G06_013 | 1/B/249:252, 1/B/274:275 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_9G06_014 | 1/B/292:293, 1/B/304:308 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_9G06_015 | 1/B/367:369, 1/B/392:393 | Single bulged U | homologous IL_5J7L_017 NA | |
| IL_9G06_016 | 1/B/371:375, 1/B/389:390 | C-loop | homologous IL_5J7L_018 NA | |
| IL_9G06_017 | 1/B/375:376, 1/B/387:389 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_9G06_018 | 1/B/409:415, 1/B/427:433 | No text annotation | homologous IL_4LFB_017 IL_62329.1 | |
| IL_9G06_019 | 1/B/440:442, 1/B/492:497 | No text annotation | geometric IL_5J7L_021 NA | |
| IL_9G06_020 | 1/B/446:450, 1/B/483:488 | tSH-tHW-tWW | homologous IL_5J7L_022 NA | |
| IL_9G06_021 | 1/B/450:455, 1/B/477:483 | No text annotation | homologous IL_5J7L_023 NA | |
| IL_9G06_022 | 1/B/504:511, 1/B/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 NA | |
| IL_9G06_023 | 1/B/515:521, 1/B/528:536 | Kink-turn related | homologous IL_4LFB_021 IL_52042.1 | |
| IL_9G06_024 | 1/B/569:575, 1/B/880:881 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_9G06_025 | 1/B/580:584, 1/B/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_9G06_026 | 1/B/594:596, 1/B/644:645 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_9G06_027 | 1/B/597:598, 1/B/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_4LFB_025 IL_73108.1 | |
| IL_9G06_028 | 1/B/605:612, 1/B/628:633 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_9G06_029 | 1/B/654:655, 1/B/751:754 | Major groove platform; stack outside cWW | geometric IL_5J7L_031 NA | |
| IL_9G06_030 | 1/B/659:660, 1/B/745:747 | Single stack bend | homologous IL_5J7L_032 NA | |
| IL_9G06_031 | 1/B/662:666, 1/B/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_9G06_032 | 1/B/673:677, 1/B/713:717 | Triple non-canonical cWW pairs | homologous IL_5J7L_361 NA | |
| IL_9G06_033 | 1/B/684:688, 1/B/699:706 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_9G06_034 | 1/B/774:778, 1/B/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.3 | |
| IL_9G06_035 | 1/B/779:783, 1/B/799:803 | tSH-tHW-tHS | homologous IL_4LFB_033 IL_05821.1 | |
| IL_9G06_036 | 1/B/887:894, 1/B/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 NA | |
| IL_9G06_037 | 1/B/922:923, 1/B/1393:1395 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_9G06_038 | 1/B/925:927, 1/B/1390:1391 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_9G06_039 | 1/B/933:935, 1/B/1380:1384 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_9G06_040 | 1/B/953:954, 1/B/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_9G06_041 | 1/B/993:997, 1/B/1044:1045 | Minor groove platform | geometric IL_5J7L_043 NA | |
| IL_9G06_042 | 1/B/998:999, 1/B/1041:1043 | Single stack bend | homologous IL_5J7L_044 NA | |
| IL_9G06_043 | 1/B/1048:1050, 1/B/1208:1209 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_9G06_044 | 1/B/1052:1056, 1/B/1204:1206 | No text annotation | homologous IL_6CZR_154 NA | |
| IL_9G06_045 | 1/B/1057:1058, 1/B/1199:1203 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_9G06_046 | 1/B/1060:1061, 1/B/1195:1197 | Single bulged A | homologous IL_5J7L_049 NA | |
| IL_9G06_047 | 1/B/1061:1063, 1/B/1193:1195 | Isolated non-canonical cWW pair | homologous IL_5J7L_050 NA | |
| IL_9G06_048 | 1/B/1124:1128, 1/B/1144:1149 | No text annotation | homologous IL_5J7L_051 NA | |
| IL_9G06_050 | 1/B/1158:1161, 1/B/1175:1181 | No text annotation | geometric IL_5J7L_053 NA | |
| IL_9G06_051 | 1/B/1247:1253, 1/B/1284:1290 | No text annotation | homologous IL_5J7L_054 NA | |
| IL_9G06_052 | 1/B/1255:1258, 1/B/1277:1282 | 180 degree turn | homologous IL_5J7L_055 NA | |
| IL_9G06_053 | 1/B/1259:1263, 1/B/1272:1276 | Double sheared with non-canonical cWW | homologous IL_5J7L_056 NA | |
| IL_9G06_054 | 1/B/1303:1308, 1/B/1329:1334 | No text annotation | homologous IL_4LFB_055 IL_57885.1 | |
| IL_9G06_055 | 1/B/1399:1401, 1/B/1501:1504 | No text annotation | homologous IL_5J7L_058 NA | |
| IL_9G06_056 | 1/B/1401:1404, 1/B/1497:1501 | No text annotation | geometric IL_8CRE_467 IL_25873.1 | |
| IL_9G06_057 | 1/B/1405:1407, 1/B/1494:1496 | Isolated non-canonical cWW pair | homologous IL_5J7L_363 NA | |
| IL_9G06_058 | 1/B/1407:1409, 1/B/1491:1494 | Decoding loop related | geometric IL_5Z1I_002 NA | |
| IL_9G06_059 | 1/B/1412:1415, 1/B/1485:1488 | No text annotation | ||
| IL_9G06_060 | 1/B/1416:1419, 1/B/1481:1484 | Double sheared | homologous IL_4LFB_060 IL_58355.1 | |
| IL_9G06_061 | 1/B/1430:1435, 1/B/1466:1470 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_9G06_062 | 1/B/1440:1442, 1/B/1460:1461 | Single bulged A | homologous IL_5J7L_064 NA | |
| IL_9G06_063 | 1/B/1445:1448, 1/B/1455:1457 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_9G06_064 | 1/a/10:12, 1/a/23:25 | Isolated cWH basepair | geometric IL_8AF0_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9G06_049 | Minor groove platform |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_9G06_001 | 1/B/46:47, 1/B/361:367, 1/B/393:395 | No text annotation | geometric J3_5J7L_001 NA | |
| J3_9G06_002 | 1/B/46:52, 1/B/359:367, 1/B/393:395 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_9G06_003 | 1/B/586:588, 1/B/651:654, 1/B/754:755 | No text annotation | geometric J3_5J7L_002 NA | |
| J3_9G06_004 | 1/B/586:588, 1/B/651:655, 1/B/751:755 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_9G06_005 | 1/B/672:673, 1/B/717:725, 1/B/732:734 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_9G06_006 | 1/B/826:829, 1/B/857:861, 1/B/868:874 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_9G06_007 | 1/B/936:939, 1/B/1344:1350, 1/B/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_9G06_008 | 1/B/943:946, 1/B/1235:1237, 1/B/1337:1340 | No text annotation | homologous J3_4LFB_003 J3_44359.1 | |
| J3_9G06_009 | 1/B/955:962, 1/B/973:984, 1/B/1221:1225 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_9G06_010 | 1/B/990:993, 1/B/1045:1047, 1/B/1210:1215 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_9G06_011 | 1/B/990:997, 1/B/1044:1047, 1/B/1210:1215 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_9G06_013 | 1/B/1063:1068, 1/B/1107:1113, 1/B/1187:1193 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_9G06_014 | 1/B/1073:1074, 1/B/1083:1086, 1/B/1099:1102 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_9G06_015 | 1/B/1116:1118, 1/B/1155:1158, 1/B/1181:1184 | No text annotation | geometric J3_5J7L_010 NA | |
| J3_9G06_016 | 1/B/1116:1118, 1/B/1155:1161, 1/B/1175:1184 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_9G06_017 | 1/B/1237:1241, 1/B/1296:1303, 1/B/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_03192.1 | |
| J4_9G06_001 | 1/B/115:122, 1/B/239:240, 1/B/286:289, 1/B/311:312 | No text annotation | homologous J4_5J7L_001 NA | |
| J4_9G06_002 | 1/B/142:144, 1/B/178:184, 1/B/193:198, 1/B/219:221 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_9G06_003 | 1/B/575:577, 1/B/764:769, 1/B/810:821, 1/B/879:880 | No text annotation | homologous J4_5J7L_003 NA | |
| J4_9G06_004 | 1/a/7:10, 1/a/25:27, 1/a/43:49, 1/a/65:66 | No text annotation | ||
| J4_9G06_005 | 1/a/7:12, 1/a/23:27, 1/a/43:49, 1/a/65:66 | No text annotation | ||
| J5_9G06_001 | 1/B/36:39, 1/B/403:406, 1/B/436:440, 1/B/497:500, 1/B/545:548 | No text annotation | homologous J5_5J7L_001 NA | |
| J5_9G06_002 | 1/B/36:39, 1/B/403:406, 1/B/436:442, 1/B/492:500, 1/B/545:548 | No text annotation | homologous J5_5J7L_002 NA | |
| J5_9G06_003 | 1/B/58:61, 1/B/106:113, 1/B/314:316, 1/B/337:339, 1/B/350:354 | No text annotation | homologous J5_5J7L_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9G06_012 | No text annotation |
Coloring options: