HL_9G06_021

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_021 not in the Motif Atlas

Homologous match to HL_4LFB_024

Geometric discrepancy: 0.0766

The information below is about HL_4LFB_024

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9G06|1|B|U|1076
9G06|1|B|G|1077
9G06|1|B|U|1078
9G06|1|B|G|1079
9G06|1|B|A|1080
9G06|1|B|A|1081

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain E

Small ribosomal subunit protein uS5