HL_9G06_023

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9G06|1|B|C|1136, 9G06|1|B|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_023 not in the Motif Atlas

Homologous match to HL_4LFB_026

Geometric discrepancy: 0.2569

The information below is about HL_4LFB_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92935.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

5

Unit IDs

9G06|1|B|G|1134
9G06|1|B|U|1135
9G06|1|B|C|1136
9G06|1|B|C|1137
9G06|1|B|G|1138
9G06|1|B|G|1139
9G06|1|B|C|1140

Current chains

Chain B

16S ribosomal RNA

Nearby chains

Chain b

Small ribosomal subunit protein uS9