HL_9G06_029

3D structure

PDB id

9G06 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-fMet-tRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

9G06|1|a|G|18, 9G06|1|a|G|19, 9G06|1|a|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G06_029 not in the Motif Atlas

Homologous match to HL_5AXM_001

Geometric discrepancy: 0.1592

The information below is about HL_5AXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_65478.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

4

Unit IDs

9G06|1|a|C|13
9G06|1|a|A|14
9G06|1|a|G|15
9G06|1|a|G|18
9G06|1|a|G|19
9G06|1|a|U|20
9G06|1|a|A|21
9G06|1|a|G|22

Current chains

Chain a

fMet-tRNA

Nearby chains

Chain J

Translation initiation factor IF-3