HL_9G1Z_023

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|1077

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_023 not in the Motif Atlas

Homologous match to HL_8CRE_023

Geometric discrepancy: 0.0651

The information below is about HL_8CRE_023

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

9G1Z|1|1|C|1072
9G1Z|1|1|U|1073
9G1Z|1|1|U|1074
9G1Z|1|1|A|1075
9G1Z|1|1|A|1076
9G1Z|1|1|U|1077
9G1Z|1|1|U|1078
9G1Z|1|1|G|1079

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

Ribosomal 60S subunit protein L21A

Chain AC

60S ribosomal protein L29

Chain m

Ribosomal 60S subunit protein L5