HL_9G1Z_033

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUUUUUC

Length

8 nucleotides

Bulged bases

9G1Z|1|1|U|1566

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_033 not in the Motif Atlas

Homologous match to HL_8CRE_033

Geometric discrepancy: 0.1072

The information below is about HL_8CRE_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28075.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9G1Z|1|1|G|1562
9G1Z|1|1|A|1563
9G1Z|1|1|U|1564
9G1Z|1|1|U|1565
9G1Z|1|1|U|1566
9G1Z|1|1|U|1567
9G1Z|1|1|U|1568
9G1Z|1|1|C|1569

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

Ribosomal 60S subunit protein L25

Chain p

60S ribosomal protein L8