Motif HL_28075.1 Version HL_28075.1 of this group appears in releases 3.95 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8CRE_067 | 8CRE | 0.9268 | 1 | 1 | LSU rRNA | C | 3160 | U | 3161 | U | 3162 | U | 3163 | U | 3164 | A | 3166 | G | 3167 | cWW | ncWW | |
| 2 | HL_7A0S_021 | 7A0S | 0.7118 | 1 | X | LSU rRNA | C | 651 | C | 652 | G | 653 | A | 655 | U | 656 | A | 657 | G | 658 | cWW | ncWW | |
| 3 | HL_6N5P_001 | 6N5P | 0.0000 | 2 | A | cyclic di-AMP riboswitch | A | 14 | U | 15 | G | 16 | U | 17 | G | 19 | U | 21 | U | 22 | cWW | cwW | |
| 4 | HL_8CRE_033 | 8CRE | 0.5984 | 1 | 1 | LSU rRNA | G | 1562 | A | 1563 | U | 1564 | U | 1565 | U | 1567 | U | 1568 | C | 1569 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUUUUUAG | 1 |
| CCGAAUAG | 1 |
| AUGUCGUUU | 1 |
| GAUUUUUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUUUA | 1 |
| CGAAUA | 1 |
| UGUCGUU | 1 |
| AUUUUU | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.60 | Avg 0.59 | Max 0.96
Coloring options: