HL_9G1Z_045

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAGU

Length

7 nucleotides

Bulged bases

9G1Z|1|1|G|2147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_045 not in the Motif Atlas

Homologous match to HL_8CRE_045

Geometric discrepancy: 0.075

The information below is about HL_8CRE_045

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9G1Z|1|1|A|2142
9G1Z|1|1|G|2143
9G1Z|1|1|A|2144
9G1Z|1|1|A|2145
9G1Z|1|1|A|2146
9G1Z|1|1|G|2147
9G1Z|1|1|U|2148

Current chains

Chain 1

25S rRNA

Nearby chains

Chain j

Ribosomal 60S subunit protein L2A

Chain p

60S ribosomal protein L8

Chain v

Ribosomal protein L15