HL_9G1Z_081

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUGAUUC

Length

8 nucleotides

Bulged bases

9G1Z|1|A|U|247

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_081 not in the Motif Atlas

Homologous match to HL_8CRE_196

Geometric discrepancy: 0.085

The information below is about HL_8CRE_196

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

9G1Z|1|A|G|241
9G1Z|1|A|A|242
9G1Z|1|A|U|243
9G1Z|1|A|G|244
9G1Z|1|A|A|245
9G1Z|1|A|U|246
9G1Z|1|A|U|247
9G1Z|1|A|C|248

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

40S ribosomal protein S6

Chain M

Ribosomal 40S subunit protein S11A