HL_9G1Z_093

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_093 not in the Motif Atlas

Homologous match to HL_8CRE_210

Geometric discrepancy: 0.0598

The information below is about HL_8CRE_210

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38491.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9G1Z|1|A|A|885
9G1Z|1|A|G|886
9G1Z|1|A|G|887
9G1Z|1|A|U|888
9G1Z|1|A|G|889
9G1Z|1|A|A|890
9G1Z|1|A|A|891
9G1Z|1|A|A|892
9G1Z|1|A|U|893
9G1Z|1|A|U|894

Current chains

Chain A

18S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein uS11

Chain b

40S ribosomal protein S26