HL_9G1Z_096

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCUUUUAUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_096 not in the Motif Atlas

Homologous match to HL_8CRE_213

Geometric discrepancy: 0.1147

The information below is about HL_8CRE_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9G1Z|1|A|U|1040
9G1Z|1|A|C|1041
9G1Z|1|A|U|1042
9G1Z|1|A|U|1043
9G1Z|1|A|U|1044
9G1Z|1|A|U|1045
9G1Z|1|A|A|1046
9G1Z|1|A|U|1047
9G1Z|1|A|U|1048
9G1Z|1|A|G|1049

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S1

Chain c

40S ribosomal protein S27