HL_9G1Z_100
3D structure
- PDB id
- 9G1Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 9G1Z|1|A|G|1228, 9G1Z|1|A|G|1230
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G1Z_100 not in the Motif Atlas
- Homologous match to HL_8CRE_217
- Geometric discrepancy: 0.1349
- The information below is about HL_8CRE_217
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_98423.3
- Basepair signature
- cWW-tSH-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
9G1Z|1|A|A|1223
9G1Z|1|A|U|1224
9G1Z|1|A|U|1225
9G1Z|1|A|G|1226
9G1Z|1|A|A|1227
9G1Z|1|A|G|1228
9G1Z|1|A|A|1229
9G1Z|1|A|G|1230
9G1Z|1|A|C|1231
9G1Z|1|A|U|1232
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain Q
- Ribosomal 40S subunit protein S15
- Chain e
- Ribosomal 40S subunit protein S29A
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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