HL_9G1Z_104

3D structure

PDB id

9G1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUCAAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G1Z_104 not in the Motif Atlas

Homologous match to HL_8CRE_221

Geometric discrepancy: 0.0727

The information below is about HL_8CRE_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_76371.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

14

Unit IDs

9G1Z|1|A|U|1382
9G1Z|1|A|U|1383
9G1Z|1|A|U|1384
9G1Z|1|A|C|1385
9G1Z|1|A|A|1386
9G1Z|1|A|A|1387
9G1Z|1|A|G|1388

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

Ribosomal 40S subunit protein S17B

Chain d

Ribosomal 40S subunit protein S28B