HL_9G33_003

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_003 not in the Motif Atlas

Geometric match to HL_4Y1M_002

Geometric discrepancy: 0.1078

The information below is about HL_4Y1M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G33|1|D2|A|196
9G33|1|D2|G|197
9G33|1|D2|A|198
9G33|1|D2|A|199
9G33|1|D2|A|200
9G33|1|D2|U|201

Current chains

Chain D2

5' ETS

Nearby chains

Chain JQ

Regulator of rDNA transcription protein 14