RNA 3D Hub //

9G33 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9G33_0011/D2/4:9GNRA related
geometric
HL_8G9Z_003
HL_37569.3
HL_9G33_0021/D2/120:125GNRA
geometric
HL_8CRE_018
NA
HL_9G33_0041/D2/251:257No text annotation
HL_9G33_0051/D2/301:305Mini UNCG
geometric
HL_8P9A_182
HL_90436.3
HL_9G33_0071/D2/424:433No text annotation
HL_9G33_0081/D2/514:521GNRA wlth tandem sheared
geometric
HL_9DFE_020
HL_98423.3
HL_9G33_0091/D3/70:81No text annotation
HL_9G33_0101/D3/154:160GNRA variation
geometric
HL_4QK9_001
HL_34789.3
HL_9G33_0121/D3/243:250T-loop with 1 bulged base
geometric
HL_8CRE_196
HL_67772.1
HL_9G33_0141/D3/330:338No text annotation
geometric
HL_8CRE_198
HL_87268.2
HL_9G33_0151/D3/364:380No text annotation
HL_9G33_0161/D3/394:403No text annotation
HL_9G33_0171/D3/414:419UNCG
geometric
HL_5Y85_004
HL_61337.3
HL_9G33_0181/D3/450:456No text annotation
HL_9G33_0191/D3/491:496GNRA
geometric
HL_6SVS_001
HL_34789.3
HL_9G33_0201/D3/520:532No text annotation
geometric
HL_8CRE_204
HL_68749.1
HL_9G33_0211/D3/561:566No text annotation
HL_9G33_0221/D3/1129:1139No text annotation
HL_9G33_0231/D3/1501:1506GNRA
geometric
HL_4V9F_023
HL_34789.3
HL_9G33_0251/D3/1594:1602No text annotation

Problematic loops

#loop idProblemSequence
HL_9G33_003GNRA
HL_9G33_006GNRA
HL_9G33_011No text annotation
HL_9G33_013UNCG variation
HL_9G33_024No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9G33_0011/D2/17:18,
1/D2/62:64		Single bulged G
geometric
IL_8TSV_002
IL_28408.2
IL_9G33_0021/D2/97:99,
1/D2/145:147		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.2
IL_9G33_0031/D2/100:104,
1/D2/140:144		No text annotation
IL_9G33_0041/D2/107:110,
1/D2/136:137		No text annotation
geometric
IL_8OI5_102
IL_71706.1
IL_9G33_0051/D2/116:117,
1/D2/128:130		No text annotation
IL_9G33_0061/D2/168:171,
1/D2/225:227		No text annotation
IL_9G33_0101/D2/238:240,
1/D2/273:274		Single bulged U
geometric
IL_6JDV_003
IL_97561.3
IL_9G33_0111/D2/245:246,
1/D2/266:268		Single bulged U
geometric
IL_2R8S_004
IL_97561.3
IL_9G33_0121/D2/250:251,
1/D2/257:262		No text annotation
IL_9G33_0131/D2/337:340,
1/D2/386:387		Major groove minor groove platform; mini C-loop
geometric
IL_4V9F_068
IL_73108.2
IL_9G33_0141/D2/340:341,
1/D2/384:386		Single bulged A
geometric
IL_5J7L_302
NA
IL_9G33_0151/D2/342:343,
1/D2/381:383		Single bulged U
geometric
IL_3WBM_001
IL_97561.3
IL_9G33_0161/D2/346:349,
1/D2/375:378		Tandem non-canonical cWW pairs
geometric
IL_280D_001
NA
IL_9G33_0171/D2/352:355,
1/D2/371:372		No text annotation
IL_9G33_0181/D2/352:356,
1/D2/369:372		No text annotation
IL_9G33_0191/D2/355:356,
1/D2/369:371		Stack outside cWW
geometric
IL_4KZD_006
IL_77710.1
IL_9G33_0201/D2/402:407,
1/D2/449:455		No text annotation
IL_9G33_0211/D2/413:414,
1/D2/441:443		Single stack bend
geometric
IL_8CRE_012
NA
IL_9G33_0221/D2/414:415,
1/D2/439:441		Single bulged U
geometric
IL_8F5G_001
IL_97561.3
IL_9G33_0231/D2/466:470,
1/D4/48:50		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_9G33_0241/D2/497:498,
1/D2/540:542		Single bulged U
geometric
IL_6JQ6_006
IL_97561.3
IL_9G33_0251/D2/501:503,
1/D2/533:537		No text annotation
geometric
IL_8P9A_315
IL_70784.1
IL_9G33_0261/D2/505:507,
1/D2/529:531		Isolated non-canonical cWW pair
geometric
IL_5DO5_003
IL_01003.3
IL_9G33_0271/D2/510:511,
1/D2/524:526		Single bulged U
geometric
IL_2R8S_004
IL_97561.3
IL_9G33_0291/D3/24:26,
1/D3/600:601		Single bulged C
geometric
IL_7A0S_055
IL_05642.2
IL_9G33_0301/D3/50:52,
1/D3/428:429		Single stack bend
geometric
IL_5J7L_249
NA
IL_9G33_0311/D3/58:63,
1/D3/87:89		No text annotation
geometric
IL_8P9A_378
IL_61299.6
IL_9G33_0321/D3/64:69,
1/D3/82:86		No text annotation
geometric
IL_8CRE_396
IL_21667.2
IL_9G33_0331/D3/109:112,
1/D3/302:305		Tandem non-canonical cWW pairs
geometric
IL_8P9A_356
IL_71194.2
IL_9G33_0341/D3/113:116,
1/D3/300:301		Multiple bulged bases
geometric
IL_8P9A_381
IL_71421.2
IL_9G33_0351/D3/117:122,
1/D3/295:299		No text annotation
geometric
IL_8CRE_399
IL_31545.1
IL_9G33_0361/D3/143:149,
1/D3/165:172		No text annotation
geometric
IL_8P9A_383
IL_24485.1
IL_9G33_0371/D3/150:152,
1/D3/162:164		Isolated cWH basepair
geometric
IL_3R1C_018
IL_10892.2
IL_9G33_0381/D3/186:189,
1/D3/196:199		Double sheared
geometric
IL_6YL5_010
IL_58355.2
IL_9G33_0391/D3/204:206,
1/D3/259:263		Isolated non-canonical cWW pair
geometric
IL_5B2P_002
IL_71625.2
IL_9G33_0401/D3/206:208,
1/D3/257:259		Isolated non-canonical cWW pair
geometric
IL_8CRE_404
IL_71625.2
IL_9G33_0411/D3/265:267,
1/D3/288:289		Single bulged A
geometric
IL_8P9A_388
IL_14190.2
IL_9G33_0421/D3/270:274,
1/D3/282:285		No text annotation
IL_9G33_0431/D3/311:316,
1/D3/348:355		Kink-turn with non-sequential stacking
geometric
IL_5J7L_014
NA
IL_9G33_0441/D3/318:324,
1/D3/344:346		No text annotation
IL_9G33_0451/D3/389:391,
1/D3/406:408		Isolated cWH basepair
geometric
IL_4KTG_002
IL_10892.2
IL_9G33_0461/D3/411:413,
1/D3/420:422		Isolated non-canonical cWW pair
geometric
IL_7ECN_002
IL_01003.3
IL_9G33_0471/D3/443:447,
1/D3/460:461		C-loop
geometric
IL_8P9A_397
IL_26900.1
IL_9G33_0481/D3/447:448,
1/D3/458:460		Single bulged G
geometric
IL_8P9A_398
IL_28408.2
IL_9G33_0491/D3/482:483,
1/D3/504:506		Single bulged A
geometric
IL_8P9A_242
IL_14190.2
IL_9G33_0501/D3/514:516,
1/D3/536:543		No text annotation
geometric
IL_8CRE_418
IL_02511.1
IL_9G33_0511/D3/517:520,
1/D3/532:535		Tandem non-canonical cWW pairs
geometric
IL_6JDV_001
IL_71194.2
IL_9G33_0521/D3/551:552,
1/D3/584:587		No text annotation
geometric
IL_5J7L_341
NA
IL_9G33_0531/D3/552:559,
1/D3/568:584		No text annotation
IL_9G33_0541/D3/1117:1119,
1/D4/6:7		Single bulged G
geometric
IL_7D7V_002
IL_28408.2
IL_9G33_0551/D3/1122:1123,
1/D4/1:3		Single bulged U
geometric
IL_2PJP_001
IL_97561.3
IL_9G33_0561/D3/1157:1160,
1/D3/1617:1621		C-loop
geometric
IL_8P9A_431
IL_63596.12
IL_9G33_0571/D3/1173:1174,
1/D3/1464:1466		Single stack bend
geometric
IL_8P9A_328
IL_15011.2
IL_9G33_0581/D3/1174:1176,
1/D3/1463:1464		Minor groove platform
geometric
IL_8P9A_443
IL_34520.3
IL_9G33_0611/D3/1495:1498,
1/D3/1509:1512		Tandem non-canonical cWW pairs
geometric
IL_3R2D_002
IL_71194.2
IL_9G33_0621/D3/1537:1539,
1/D3/1571:1572		No text annotation
IL_9G33_0631/D3/1539:1542,
1/D3/1568:1571		Tandem non-canonical cWW pairs
geometric
IL_5LQT_002
IL_15225.2
IL_9G33_0641/D3/1542:1545,
1/D3/1566:1568		No text annotation
geometric
IL_4N0T_004
IL_32983.2
IL_9G33_0651/D3/1650:1652,
1/D3/1748:1750		Isolated non-canonical cWW pair
geometric
IL_4J50_002
IL_01003.3
IL_9G33_0661/D3/1653:1656,
1/D3/1744:1747		Tandem non-canonical cWW pairs
geometric
IL_5LQO_002
IL_15225.2
IL_9G33_0671/D4/78:85,
1/D4/325:329		No text annotation
IL_9G33_0681/D4/85:96,
1/D4/320:325		No text annotation
IL_9G33_0691/D4/97:98,
1/D4/317:319		No text annotation
IL_9G33_0701/D4/111:115,
1/D4/252:259		No text annotation

Problematic loops

#loop idProblemSequence
IL_9G33_007Isolated non-canonical cWW pair
IL_9G33_008Isolated non-canonical cWW pair
IL_9G33_009Isolated non-canonical cWW pair
IL_9G33_028Isolated non-canonical cWW pair
IL_9G33_059No text annotation
IL_9G33_060Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9G33_0011/D3/1161:1164,
1/D3/1581:1587,
1/D3/1609:1616		No text annotation
geometric
J3_8CRE_078
J3_85722.1
J3_9G33_0021/D3/1168:1171,
1/D3/1468:1470,
1/D3/1574:1577		No text annotation
geometric
J3_4LFB_003
J3_44359.1
J3_9G33_0031/D3/1470:1474,
1/D3/1533:1537,
1/D3/1572:1574		No text annotation
J4_9G33_0011/D3/99:107,
1/D3/307:309,
1/D3/357:363,
1/D3/381:384		No text annotation
J5_9G33_0011/D2/291:299,
1/D2/307:333,
1/D2/391:397,
1/D2/460:462,
1/D4/54:62		No text annotation
J5_9G33_0021/D3/31:35,
1/D3/473:479,
1/D3/509:514,
1/D3/543:546,
1/D3/592:595		No text annotation
J5_9G33_0031/D3/31:35,
1/D3/473:479,
1/D3/509:516,
1/D3/536:546,
1/D3/592:595		No text annotation

Problematic loops

No problematic loops


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