HL_9G33_006

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_006 not in the Motif Atlas

Geometric match to HL_9DFE_015

Geometric discrepancy: 0.1372

The information below is about HL_9DFE_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G33|1|D2|C|360
9G33|1|D2|G|361
9G33|1|D2|C|362
9G33|1|D2|A|363
9G33|1|D2|A|364
9G33|1|D2|G|365

Current chains

Chain D2

5' ETS

Nearby chains

Chain UG

U3 small nucleolar RNA-associated protein 7