HL_9G33_010

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

9G33|1|D3|U|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_010 not in the Motif Atlas

Geometric match to HL_4QK9_001

Geometric discrepancy: 0.2379

The information below is about HL_4QK9_001

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G33|1|D3|G|154
9G33|1|D3|U|155
9G33|1|D3|A|156
9G33|1|D3|A|157
9G33|1|D3|U|158
9G33|1|D3|U|159
9G33|1|D3|C|160

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DG

40S ribosomal protein S6-A

Chain JA

RNA cytidine acetyltransferase