HL_9G33_023

3D structure

PDB id

9G33 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stalled 90S - Utp23-Krr1-deltaC3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G33_023 not in the Motif Atlas

Geometric match to HL_4V9F_023

Geometric discrepancy: 0.0804

The information below is about HL_4V9F_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9G33|1|D3|C|1501
9G33|1|D3|G|1502
9G33|1|D3|A|1503
9G33|1|D3|G|1504
9G33|1|D3|A|1505
9G33|1|D3|G|1506

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CL

Ribosome biogenesis protein BMS1

Chain UC

Something about silencing protein 10

Chain UK

U3 small nucleolar RNA-associated protein 11

Chain UZ

Ribosome biogenesis protein UTP30