HL_9G5C_004

3D structure

PDB id

9G5C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Assembly intermediate of human mitochondrial ribosome small subunit (State B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCUAG

Length

5 nucleotides

Bulged bases

9G5C|1|A|C|793, 9G5C|1|A|A|795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G5C_004 not in the Motif Atlas

Geometric match to HL_8P9A_116

Geometric discrepancy: 0.1166

The information below is about HL_8P9A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.6

Basepair signature

cWW-F

Number of instances in this motif group

11

Unit IDs

9G5C|1|A|C|792
9G5C|1|A|C|793
9G5C|1|A|U|794
9G5C|1|A|A|795
9G5C|1|A|G|796

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain M

28S ribosomal protein S16, mitochondrial

Chain T

28S ribosomal protein S25, mitochondrial