HL_9G5E_001

3D structure

PDB id

9G5E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G5E_001 not in the Motif Atlas

Homologous match to HL_4LFB_001

Geometric discrepancy: 0.1382

The information below is about HL_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_73535.1

Basepair signature

cWW-tHW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

9G5E|1|A|U|654
9G5E|1|A|U|655
9G5E|1|A|U|656
9G5E|1|A|G|657
9G5E|1|A|G|658
9G5E|1|A|U|659
9G5E|1|A|C|660
9G5E|1|A|C|661
9G5E|1|A|U|662
9G5E|1|A|A|663
9G5E|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial