RNA 3D Hub //

9G5E Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_9G5E_0011/A/654:664No text annotation
homologous
HL_4LFB_001
HL_31940.1
HL_9G5E_0021/A/701:708No text annotation
HL_9G5E_0031/A/768:773GNRA
geometric
HL_5FJC_002
HL_34789.1
HL_9G5E_0041/A/792:796No text annotation
geometric
HL_6U8D_003
HL_32346.5
HL_9G5E_0051/A/804:809No text annotation
HL_9G5E_0061/A/842:847GNRA
homologous
HL_4LFB_010
HL_34789.1
HL_9G5E_0071/A/894:899GNRA variation
homologous
HL_5J7L_205
NA
HL_9G5E_0081/A/989:998No text annotation
geometric
HL_4LFB_015
HL_38491.1
HL_9G5E_0091/A/1023:1028GNRA
geometric
HL_4LFB_016
HL_34789.1
HL_9G5E_0101/A/1074:1084No text annotation
homologous
HL_5J7L_017
NA
HL_9G5E_0111/A/1150:1155No text annotation
geometric
HL_5E08_001
NA
HL_9G5E_0121/A/1217:1226No text annotation
homologous
HL_5J7L_021
NA
HL_9G5E_0131/A/1281:1287GNRA related
geometric
HL_8G9Z_003
HL_37569.1
HL_9G5E_0141/A/1310:1315No text annotation
HL_9G5E_0151/A/1373:1379No text annotation
HL_9G5E_0161/A/1399:1407T-loop with 2 stacked bulged bases
geometric
HL_4WJ4_003
NA
HL_9G5E_0171/A/1440:1450No text annotation
homologous
HL_5J7L_029
NA
HL_9G5E_0181/A/1580:1585GNRA
homologous
HL_5J7L_031
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_9G5E_0011/A/649:651,
1/A/667:668		No text annotation
IL_9G5E_0021/A/674:676,
1/A/921:923		No text annotation
geometric
IL_5E81_401
IL_42997.4
IL_9G5E_0031/A/685:686,
1/A/859:861		Single bulged A
homologous
IL_5J7L_002
NA
IL_9G5E_0041/A/690:692,
1/A/822:823		Single bulged A
geometric
IL_6WPI_001
IL_14190.1
IL_9G5E_0051/A/694:696,
1/A/819:820		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_9G5E_0061/A/727:729,
1/A/744:747		No text annotation
geometric
IL_9DFE_030
IL_82096.1
IL_9G5E_0071/A/729:732,
1/A/742:744		No text annotation
geometric
IL_9DFE_030
IL_82096.1
IL_9G5E_0081/A/756:761,
1/A/779:786		Kink-turn with non-sequential stacking
geometric
IL_6CZR_123
NA
IL_9G5E_0091/A/762:765,
1/A/777:778		Major groove platform; stack outside cWW
geometric
IL_3DIL_004
IL_74641.1
IL_9G5E_0101/A/762:766,
1/A/775:778		No text annotation
IL_9G5E_0111/A/765:766,
1/A/775:777		No text annotation
IL_9G5E_0121/A/830:832,
1/A/855:856		Single bulged U
homologous
IL_5J7L_017
NA
IL_9G5E_0131/A/834:838,
1/A/852:853		C-loop
homologous
IL_5J7L_018
NA
IL_9G5E_0141/A/838:839,
1/A/850:852		Single bulged G
homologous
IL_5J7L_019
NA
IL_9G5E_0151/A/876:885,
1/A/910:913		No text annotation
IL_9G5E_0161/A/935:941,
1/A/1133:1134		No text annotation
homologous
IL_5J7L_026
NA
IL_9G5E_0171/A/946:950,
1/A/1044:1049		No text annotation
IL_9G5E_0181/A/974:980,
1/A/1008:1014		No text annotation
IL_9G5E_0191/A/982:984,
1/A/1004:1006		Isolated non-canonical cWW pair
geometric
IL_8CRE_049
NA
IL_9G5E_0201/A/1020:1022,
1/A/1029:1030		Other IL
geometric
IL_3WBM_004
NA
IL_9G5E_0211/A/1062:1066,
1/A/1092:1093		Left turn
homologous
IL_5J7L_036
NA
IL_9G5E_0221/A/1067:1071,
1/A/1087:1091		tSH-tHW-tHS
geometric
IL_6CZR_135
NA
IL_9G5E_0231/A/1109:1111,
1/A/1130:1132		Isolated non-canonical cWW pair
geometric
IL_8CRE_425
IL_01003.1
IL_9G5E_0241/A/1139:1147,
1/A/1158:1164		No text annotation
IL_9G5E_0251/A/1175:1176,
1/A/1477:1479		Single bulged A
homologous
IL_6CZR_147
NA
IL_9G5E_0261/A/1178:1180,
1/A/1474:1475		Single bulged G
homologous
IL_6CZR_148
NA
IL_9G5E_0271/A/1186:1190,
1/A/1464:1468		No text annotation
IL_9G5E_0281/A/1208:1209,
1/A/1355:1357		Minor groove platform
homologous
IL_5J7L_042
NA
IL_9G5E_0291/A/1244:1252,
1/A/1340:1345		No text annotation
IL_9G5E_0301/A/1253:1255,
1/A/1338:1339		Single bulged U
homologous
IL_4LFB_042
IL_97561.1
IL_9G5E_0311/A/1257:1261,
1/A/1334:1336		No text annotation
homologous
IL_6CZR_154
NA
IL_9G5E_0321/A/1262:1263,
1/A/1329:1333		Minor groove platform
homologous
IL_6CZR_155
NA
IL_9G5E_0331/A/1265:1266,
1/A/1325:1327		Single bulged A
homologous
IL_5J7L_049
NA
IL_9G5E_0341/A/1266:1268,
1/A/1323:1325		Isolated non-canonical cWW pair
homologous
IL_5J7L_050
NA
IL_9G5E_0351/A/1274:1277,
1/A/1298:1301		Double sheared
geometric
IL_8CRE_402
IL_58355.1
IL_9G5E_0361/A/1278:1279,
1/A/1289:1297		No text annotation
IL_9G5E_0371/A/1388:1393,
1/A/1413:1418		No text annotation
IL_9G5E_0381/A/1483:1485,
1/A/1566:1569		No text annotation
homologous
IL_5J7L_058
NA
IL_9G5E_0391/A/1485:1488,
1/A/1562:1566		No text annotation
homologous
IL_5J7L_059
NA
IL_9G5E_0401/A/1489:1491,
1/A/1559:1561		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
NA
IL_9G5E_0411/A/1491:1495,
1/A/1554:1559		Partly complementary
homologous
IL_6CZR_167
NA

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_9G5E_0011/A/687:690,
1/A/823:830,
1/A/856:858		No text annotation
J3_9G5E_0021/A/973:974,
1/A/1014:1020,
1/A/1030:1031		No text annotation
J3_9G5E_0031/A/1192:1194,
1/A/1428:1434,
1/A/1456:1462		No text annotation
J3_9G5E_0041/A/1198:1201,
1/A/1364:1366,
1/A/1421:1424		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_9G5E_0051/A/1210:1216,
1/A/1227:1238,
1/A/1351:1354		No text annotation
J3_9G5E_0061/A/1268:1273,
1/A/1302:1308,
1/A/1317:1323		No text annotation
homologous
J3_4LFB_007
J3_01343.1
J4_9G5E_0011/A/698:701,
1/A/708:715,
1/A/800:802,
1/A/811:817		No text annotation
J4_9G5E_0021/A/717:724,
1/A/750:753,
1/A/789:791,
1/A/797:798		No text annotation
J4_9G5E_0031/A/941:943,
1/A/1052:1057,
1/A/1098:1109,
1/A/1132:1133		No text annotation
homologous
J4_5J7L_003
NA

Problematic loops

No problematic loops


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