HL_9G6J_012

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GCUUCUGC

Length

8 nucleotides

Bulged bases

9G6J|1|1|G|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_012 not in the Motif Atlas

Homologous match to HL_8CRE_012

Geometric discrepancy: 0.3756

The information below is about HL_8CRE_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27483.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

9G6J|1|1|G|539
9G6J|1|1|C|540
9G6J|1|1|U|541
9G6J|1|1|U|542
9G6J|1|1|C|543
9G6J|1|1|U|544
9G6J|1|1|G|545
9G6J|1|1|C|546

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 0

60S ribosomal protein L20

Chain q

Ribosomal 60S subunit protein L9B

Chain u

Ribosomal 60S subunit protein L14B