HL_9G6J_013

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUUUUA

Length

6 nucleotides

Bulged bases

9G6J|1|1|U|599, 9G6J|1|1|U|600, 9G6J|1|1|U|601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_013 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.1946

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

9G6J|1|1|U|597
9G6J|1|1|U|598
9G6J|1|1|U|599
9G6J|1|1|U|600
9G6J|1|1|U|601
9G6J|1|1|A|602

Current chains

Chain 1

25S rRNA

Nearby chains

Chain l

Ribosomal 60S subunit protein L4B

Chain o

Ribosomal 60S subunit protein L7A