HL_9G6J_024

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

9G6J|1|1|G|1127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_024 not in the Motif Atlas

Homologous match to HL_8P9A_137

Geometric discrepancy: 0.0664

The information below is about HL_8P9A_137

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

9G6J|1|1|G|1122
9G6J|1|1|G|1123
9G6J|1|1|U|1124
9G6J|1|1|A|1125
9G6J|1|1|A|1126
9G6J|1|1|G|1127
9G6J|1|1|C|1128

Current chains

Chain 1

25S rRNA

Nearby chains

Chain r

Ribosomal 60S subunit protein L10