HL_9G6J_029
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- AGCAGUU
- Length
- 7 nucleotides
- Bulged bases
- 9G6J|1|1|G|1503, 9G6J|1|1|U|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_029 not in the Motif Atlas
- Homologous match to HL_8CRE_031
- Geometric discrepancy: 0.0535
- The information below is about HL_8CRE_031
- Detailed Annotation
- Pseudoknot geometry with 3' bulge
- Broad Annotation
- No text annotation
- Motif group
- HL_57176.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 14
Unit IDs
9G6J|1|1|A|1502
9G6J|1|1|G|1503
9G6J|1|1|C|1504
9G6J|1|1|A|1505
9G6J|1|1|G|1506
9G6J|1|1|U|1507
9G6J|1|1|U|1508
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain AM
- 60S ribosomal protein L39
- Chain x
- Ribosomal 60S subunit protein L17B
- Chain z
- Ribosomal protein L19
Coloring options: