HL_9G6J_040

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9G6J|1|1|U|1921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_040 not in the Motif Atlas

Homologous match to HL_8P9A_154

Geometric discrepancy: 0.0538

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9G6J|1|1|C|1919
9G6J|1|1|U|1920
9G6J|1|1|U|1921
9G6J|1|1|C|1922
9G6J|1|1|G|1923
9G6J|1|1|G|1924

Current chains

Chain 1

25S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain AO

Small ribosomal subunit protein eS32

Chain AQ

Ribosomal 60S subunit protein L43A