HL_9G6J_047

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9G6J|1|1|A|2350, 9G6J|1|1|A|2351, 9G6J|1|1|C|2352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_047 not in the Motif Atlas

Homologous match to HL_8CRE_049

Geometric discrepancy: 0.0503

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

9G6J|1|1|G|2347
9G6J|1|1|G|2348
9G6J|1|1|G|2349
9G6J|1|1|A|2350
9G6J|1|1|A|2351
9G6J|1|1|C|2352
9G6J|1|1|G|2353
9G6J|1|1|G|2354
9G6J|1|1|G|2355
9G6J|1|1|C|2356

Current chains

Chain 1

25S rRNA

Nearby chains

Chain AF

Ribosomal 60S subunit protein L32

Chain k

60S ribosomal protein L3