HL_9G6J_048

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGUCAAAC

Length

8 nucleotides

Bulged bases

9G6J|1|1|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_048 not in the Motif Atlas

Homologous match to HL_8CRE_051

Geometric discrepancy: 0.4002

The information below is about HL_8CRE_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_00914.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

1

Unit IDs

9G6J|1|1|G|2514
9G6J|1|1|G|2515
9G6J|1|1|U|2516
9G6J|1|1|C|2517
9G6J|1|1|A|2518
9G6J|1|1|A|2519
9G6J|1|1|A|2520
9G6J|1|1|C|2521

Current chains

Chain 1

25S rRNA

Nearby chains

Chain C

40S ribosomal protein S1