HL_9G6J_053
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CAAAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_053 not in the Motif Atlas
- Homologous match to HL_8CRE_056
- Geometric discrepancy: 0.0821
- The information below is about HL_8CRE_056
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9G6J|1|1|C|2665
9G6J|1|1|A|2666
9G6J|1|1|A|2667
9G6J|1|1|A|2668
9G6J|1|1|A|2669
9G6J|1|1|G|2670
9G6J|1|1|G|2671
9G6J|1|1|G|2672
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 2
- Ribosomal 60S subunit protein L21A
- Chain AP
- Ribosomal 60S subunit protein L42A
- Chain PT
- Transfer RNA; tRNA
- Chain r
- Ribosomal 60S subunit protein L10
Coloring options: