HL_9G6J_065

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

9G6J|1|1|A|3208, 9G6J|1|1|A|3209, 9G6J|1|1|G|3211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_065 not in the Motif Atlas

Homologous match to HL_8CRE_068

Geometric discrepancy: 0.0613

The information below is about HL_8CRE_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07886.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

9G6J|1|1|C|3205
9G6J|1|1|G|3206
9G6J|1|1|G|3207
9G6J|1|1|A|3208
9G6J|1|1|A|3209
9G6J|1|1|A|3210
9G6J|1|1|G|3211
9G6J|1|1|G|3212

Current chains

Chain 1

25S rRNA

Nearby chains

Chain k

60S ribosomal protein L3

Chain w

Ribosomal 60S subunit protein L16A