HL_9G6J_084

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

9G6J|1|A|A|414

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_084 not in the Motif Atlas

Homologous match to HL_8CRE_201

Geometric discrepancy: 0.0817

The information below is about HL_8CRE_201

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

49

Unit IDs

9G6J|1|A|C|412
9G6J|1|A|C|413
9G6J|1|A|A|414
9G6J|1|A|A|415
9G6J|1|A|G|416
9G6J|1|A|G|417

Current chains

Chain A

18S rRNA

Nearby chains

Chain 6

Ribosomal 60S subunit protein L23B

Chain H

40S ribosomal protein S6