HL_9G6J_085

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGACACG

Length

7 nucleotides

Bulged bases

9G6J|1|A|A|450, 9G6J|1|A|A|452, 9G6J|1|A|C|453

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_085 not in the Motif Atlas

Homologous match to HL_8CRE_202

Geometric discrepancy: 0.0941

The information below is about HL_8CRE_202

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.1

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

9G6J|1|A|C|448
9G6J|1|A|G|449
9G6J|1|A|A|450
9G6J|1|A|C|451
9G6J|1|A|A|452
9G6J|1|A|C|453
9G6J|1|A|G|454

Current chains

Chain A

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain Z

40S ribosomal protein S24