HL_9G6J_099

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGUGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_099 not in the Motif Atlas

Homologous match to HL_8CRE_218

Geometric discrepancy: 0.0837

The information below is about HL_8CRE_218

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9G6J|1|A|A|1281
9G6J|1|A|G|1282
9G6J|1|A|U|1283
9G6J|1|A|G|1284
9G6J|1|A|A|1285
9G6J|1|A|U|1286

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S0

Chain D

Ribosomal 40S subunit protein S2