HL_9G6J_101

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

9G6J|1|A|U|1347, 9G6J|1|A|U|1348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_101 not in the Motif Atlas

Homologous match to HL_8CRE_220

Geometric discrepancy: 0.2898

The information below is about HL_8CRE_220

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

9G6J|1|A|C|1344
9G6J|1|A|A|1345
9G6J|1|A|U|1346
9G6J|1|A|U|1347
9G6J|1|A|U|1348
9G6J|1|A|G|1349

Current chains

Chain A

18S rRNA

Nearby chains

Chain G

Ribosomal 40S subunit protein S5

Chain R

Ribosomal 40S subunit protein S16A

Chain U

Ribosomal 40S subunit protein S19A