HL_9G6J_108
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9G6J_108 not in the Motif Atlas
- Homologous match to HL_6GSK_203
- Geometric discrepancy: 0.1409
- The information below is about HL_6GSK_203
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 29
Unit IDs
9G6J|1|AT|G|32
9G6J|1|AT|C|33
9G6J|1|AT|U|34
9G6J|1|AT|C|35
9G6J|1|AT|A|36
9G6J|1|AT|U|37
9G6J|1|AT|A|38
9G6J|1|AT|A|39
9G6J|1|AT|C|40
Current chains
- Chain AT
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain MR
- mRNA
- Chain Y
- Ribosomal 40S subunit protein S23B
- Chain f
- 40S ribosomal protein S30
- Chain g
- Ubiquitin-ribosomal 40S subunit protein S31 fusion protein
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