HL_9G6J_111

3D structure

PDB id

9G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GCUCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9G6J_111 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.0741

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9G6J|1|PT|G|32
9G6J|1|PT|C|33
9G6J|1|PT|U|34
9G6J|1|PT|C|35
9G6J|1|PT|A|36
9G6J|1|PT|U|37
9G6J|1|PT|A|38
9G6J|1|PT|A|39
9G6J|1|PT|C|40

Current chains

Chain PT

tRNA-fMet

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain MR

mRNA

Chain R

Ribosomal 40S subunit protein S16A